THE EXPRESSION OF PEROXISOME PROLIFERATOR-ACTIVATED RECEPTOR 1 (PPARy1 AND PPARy.2)
J.N
.NAiVE. AND MEMORY CD4+ TLYMPHOCYTES
by
RAFEEZUL BIN MOHAME.D
Thesis submitted in fulfillment of the requirements for the degree of Master of Science
November 2006
ACKNOWLEDGEMENTS
In the name of Allah, the most Merciful and Compassionate
All praises and gratitude is due to Allah, the lord to whom every single creature in the heavens and the earth belongs to. May
peace
and blessings be upon our prophet Muhammad SA.W, his family and companions.A bouquet of appreciation to my supervisors, Prof. Norazmi Mohd. Nor and Assoc. Prof.
Dr. Nik Soriani Yaacob for their invaluable guidancet criticism
and
support throughout this study. I am very grateful to the Ministry of Science, Technology and Innovation (MOSTI) for awarding me the National Science Fellowship scholarship. I also wish tothank
the Dean of the School of Health Sciences and the Director of Institute for Researchin
Molecular Medicine, Universiti Sains Malaysia for giving me the opportunity to work in their laboratories.All the members and ex-members
of
the 'NMNINSY, Research Group especially Dr.Zulkamain, Dr. Rapeah, Or. Rahimah, Ariffin, K. Tie, K. Halisa, K Maryam, Teo, Rozairi,
Irna.
Asma and Kenny deservemy
gratitude fortheir
warm friendship and encouragementSpecial thanks to Encik Norhissyam Yaakob, Puan Rohayu Mahamat and Encik
Jamaruddin Mat Asan for their invaluable assistance in various aspects of the labwork carried out in this study.Finally, I am very thankful to my beloved
motherand my family for their warm love, which
drives my spirit to keep striving in the trying times. I love you and pray for you aU.
TABLE OF CONTENTS
ACKNO~DGEMENTS
TABLE OF CONTENTS LIST OF TABLES UST OF FIGURES
LIST OF ABBREVIATIONS UST OF SYMBOLS
ABSTRAK ABSTRACT
CHAPTER 11NTRODUCTION 1.1 T cell development
1.1.1 Generation ofT cells 1.2 T cell recognition
1.2 .. 1 Antigen presenting ceHs
1.2.2 Antigen presentation by major histocompatibility complex 1.2.3 Antigen processing
1.2.4 Antigen presentation to T lymphocytes 1.2 .. 5 Second signal-co-stimulator molecules 1.2 .. 6 T cell activation
1.3 The protein tyrosine phosphatase, C045 1.3.1 Structure of CD45
1.3 .2 Biological functions
1 .. 3.3 CD45 regulates protein tyrosine kinase, Lck
1.3.4 CD45
inactivateJAK
family kinase1.4 Na"ive C04+ T cells
Page
ii
viiviii
X
xiv XV
xviii
1
1
3
34
7 1114
1620
20
2323
24
24
1.5 Memory CD4+ T cells
1.6 Peroxisome prolfferator-activated receptor {PP AR) 1.6.1 Background
1.6.2 PPAR structure 1.62.1 AlB Domain 1.6.2.2
C
Domain 1.6.2.3 D Domain 1.6.2.4 E Domain1.6.2.5
F~cdn1.6.3 Transcriptional activation
of
PPAR 1.6.4 PPAR isoforms1.6.4.1 PPARa 1.6.42 PPARf3/6 1.6.4.3 PPARy
1. 7 Peroxisome proliferator-activated receptor
r
(PPARy) 1. 7.1 Genomic organization of PPARy1. 7.2 Ugands
of
PPARy 1. 7 .2.1 Natural ligands
1.7.2.2 Synthetic ligands 1. 7.3 Biological fundions of PPARy1. 7 .3.1 Adipocyte differentiation 1.7.3.21nsuRn sensitization
1. 7 .3.3 Cancer
1.7.3.4 Inflammation
1.7.3.5 Regulation
of
immune responseiii
26 28 28 28 30
30 30 3031 31 33
33
34 35
36
36
3838 38 39
39 4040
41
42
1.8 Real-TimePCR 1.9 Multiplex PCR
1.10 Rationale and research objectives CHAPTER 2 MATERIALS AND METHODS 2.1 Materials and chemicals
2~ 1.1 Chemical and reagents 2.1.2 Kits and consumabtes 2.1.3 Enzymes and antibodies
2.1.4 Laboratory apparatus and equipment
2.1.5
Computer application programmes and software 2.2 Preparation of general solutions and buffers2.2.1 ACK
2.2.2 PBS
2.2.3 DEPC2.2.4 Ethanol (70%) 2.2.5 NaCI {5 M}
2.2.6 NaOH (3 M) 2.2 7 HCI (1M)
2.3 Agarose gel electrophoresis 2.3.1 Buffers and reagents
2.4 DNA agarose gel electrophoresis 2.4.1 Preparation of agarose gel
2.4.2 Agarose gel electrophoresis
2.5 Cellculture
2.5.1 Reagents
43 44
4548
48 48 4848 48
54 5454
5454 55 55
55
55 55 57
5757
57
57
2.5.2 Culture condition 2.6 Peripheral blood
2.71solation of naive and memory CD4+ T cells 2. 7.1 Isolation of PBMC
2. 7.2 Isolation of CD4+ T cells
2.7.2.1 Magnetic labeling 2.7.2.2 Magnetic separation2. 7.3 Isolation
of naive
and memory CD4+ T cells 2.7.3.1Magnetic labeling
2.7 .3.2
Magnetic
separation 2.8 Flow cytometric analyses2.9 Stimulation
of naive
and memory CD4+ T cells 2.9.1 Preparationof
ciglitazone (100 mM) 2.9.2 Preparationof rHJ thymidine
(1p.Ci}
2.9.3 In vitro stimulation of
naive
and memory CD4+ T cells 2.9.4 Proliferationassay
2.10 Isolation of Total RNA
2.1 0.1 Total RNA extraction
2.1 0.2
Electrophoresis
of total RNA2~
10.3 Measurement of RNA purity and concentration
2.11 First strand eDNA synthesis2.11.1 Verification of eDNA synthesis
2.12 Real-Time PCR
2.12.1 Reagents for Real-Time PCR 2.12.2 Real-Time PCR setup
2.13 Multiplex PCR
v
58 58
59 59 59 59 60 60 60 60
61 61·61 63 63
63
64
64
65
65
65 6666
66
70
71
2.13.1 Preparation
of reaction mixture
for MPCR 2.13.2 MPCR thermal profile2.13.3 Densitometric analysis of MPCR products 2.14 Statistical analysis
CHAPTER 3 RESULTS
71
72 72 74
3.1 Efficiency of naive and memory CD4+ T cell isolation 75 3.2 Proliferative response of CD3/CD28-stimulated
naive
and memory C04+ T 75cells
3.31solati0n of total RNA 79
3.4 First strand eDNA analysis 79
3.5 Quantification of PPARy1 and PPARy2 expression 82
3.6 The expression of selected cytokines in unstimulated and stimulated naive 88
and memory C04+ T cells ·
3. 7
Summary of results
95CHAPTER 4 GENERAL DISCUSSIONS AND CONCLUSIONS
4.1General
discussions4.2 Conclusions 4.3 Future studies REFERENCES APPENDICES
97
118
119
121
147
LIST OF TABLES
Table
Idle
PageTable 2.1 List of general chemicals and reagents 49
Table2.2 List of commercial kits and consumables 50
Table 2.3 List of enzymes and antibodies
51
Table 2.4 Ust of laboratory apparatus and equipment
52
Table2.5 Listof
computer application programmes and software 53 Tab1e2.6 Fluorescence-labeled antibodies for dual-labeled flow cytometry62
Table 2..7 Primer andprobe
sequences_ of human PPARy1 and PPARy268
Table2 .. 8 Composition of Real-Time PCR mixture 69
Table2.9A Optimum thennal profiles for MPCR analysis of cytokine genes
73
using the MPCR kit for Human Inflammatory Cytokine Genes Set-1Table 2.98
Optimum thermal profiles for MPCR analysis of cytokine genes 73
using the MPCR kit for Human Th1ITh2 Cytokine Genes Set-1vii
UST OF
FIGURESFigure Title
Page
Figure 1.1 Pathways ofT cell development 2
Figure 1.2 Antigen presenting cells (APCs)
5
Figure 1.3 The genetic organization of MHC class J and II molecules 6
Ftgure 1.4 MHC molecules 8
Figure 1.5 Antigens processing pathways
10
Figure 1 .. 6 TCR complex
13
Figure 1.7 Critical molecules involved in antigen presentation
15
Figure 1.8 The IT AM complex 17
Figure 1.9 Intracellular signaling in T cell activation 19
Figure 1.10 The CD45 strudure.
21
Figure 1.11 Genomic organization of CD45ABC
22
Figure 1 ..
12
Schematic representation of the structure of PPARs29
Figure 1.13 Transcriptional adivation of PPARy 32
Figure
1.14 Genomic organization of the human PPARy gene 37
Figure 1.15 Workflow for the current study
47
Figure 3.1 A representative dot plot after separation
of
non-CD4+ Tcells 76
Figure 3.2 A representative dot plot of the (a) unseparated na"ive and memory 77CD4+ T cells (b) memory
CD4+
T celt (c) naive CD4+ T cellFigure 3.3 Profiles of [~]thymidine incorporation
of naive
and memory CD4+ T78
cells after in vitro stimulationFigure 3.4 Veriftcation
of
the integrityof
total RNA extracted from unstimulated80 and stimulated naive and memory CD4+ T cells with or
withoutciglitazone
Figure 3.5 Verifscation of the success of the first strand .. ~NA synthesis
81
Figure 3.6 A) The amplifiCation plot and B) the standard curve for measurement
83
of PPARy1 gene expression in unstimulated and stimulatedna·ive
and memory CD4+ T cells
Figure 3.7 A) The amplification plot and B) the standard curve for measurement 84 of PPARr2 gene expression in unstimulated and stimulated naive
and memory CD4+ T cells
Figure 3 .. 8 PPARy1 gene expression levels in unstimulated and stimulated
86
na"ive and memory CD4+ T cells with or without the presenceof
ciglitazone
Figure 3.9 PPARy2 gene expression levels
in
unstimulated and stimulated 87 na"ive and memory CD4+ T cells with or without ciglitazonetreatment
Figure 3.10 An example of MPCR products for the analysis of selected gene
89
expression using MPCR kit for Human Inflammatory Cytokine Set-1Figure 3.11 An example of MPCR products for the analysis of selected gene
90
expression using MPCR kit for Human Th 1/Th2 Cytokine Set-2Figure 3.12 Relative mRNA expression Jevels
of
Human Inflammatory cytokine92
genes in naive and memory CD4+ T cellsFigure 3.13 Relative mRNA expression levels of Human Th1rrh2 cytokine genes 94 in
naive
and memory C04+ T cellsFigure 3.14 Summary of results
96
ix
13-ME
15d-PGJ2
AF-1 AF-2
AP-1APC
bpCaCb
eDNAC02
Co A CoR CtCDR CTLA-4
DAGDBO
DC
DMSO
ON DNA
DP
UST OF ABBREVIATIONS
(3-Mercaptoethanol
15-deoxyi-A 12. 14-prostaglandin J2
activation function-1 activation function-2 Activated protein·1
Antigen presenting cells
Base pairCalcium chloride Complementary DNA Carbon dioxide Co-activator Co-repressor Threshold cycle
Complementary determining region
Cytotoxic T lymphocyte
associatedantigen-4 Diacylglycerol
DNA-binding domain Dendritic cell
Dimethyl
sulphaxideDouble negative
Deoxylribonucleic acid
Double positiveEDTA
EtBr FAM FBS g
GM-CSF h
HCI IKB
IT AMkDa L
LBO
LDH
M mgMgCI2
minmAb MHC
NaCt NaOH
Ethylenediamine-tetra acetic acid Ethidium bromide
6-carboxyfluorescein Foetal bovine albumin gram
Granulocyte monocyte colony-stimulating factor hour
Hydrochloric acid
Inhibitor
ofKB
lmunoreceptor tyrosine adivation motif kiloDalton
litre
Ugand binding domain Lactate dehydrogenase
molar
miligram
Magnesium chloride
minute
Monoclonal antibody
Major histocompatibility complex Sodium chloride
Sodium hydroxide
xi
NFAT Nuclear factor activated T ceJls
NF-KB Nuclear factor tcB
NHR
Nuclear hormone receptorng
NanogramNTC No template control
PBS Phosphate-buffered saline
PCR Polymerase chain reaction
PKC Protein kinase C
PTK Protein tyrosine kinase
PTP
Protein tyrosine phosphatasePTPRC
Protein tyrosine phosphatase receptor typeC
PPAR Peroxisome proliferator-activated receptor PPRE Peroxisome proliferator response element
Rn
Normalized reporterRNA Ribonucleic acid
RPM I Roselle's Park Memorial Institute Medium
RT-PCR Reverse transcriptase PCR
RXR
Retinoidacid
receptorTAE Tris-acetate-EDTA
TAMRA
6-alrboxyl-tetramethyl-rhodamineTCR T ceU receptor
TBE
Tris-borate-EOTA
TNF TZD
tlv
Melting temperature Tumour necrosis factor Thiazolidinedione Ultra violet
xiii
UST OF SYMBOLS
j.l micro
< less than
oc
degree Celciusa alpha
(3 beta
a
deltar gamma
K kappa
TM trademark
® registered l;
zeta
s
epselonPENGEKSPRESAN RESEPTOR TERAKTIF PEMPROLIFERASI PEROKSISOM
y (PPARy1- DAN PP.ARy2) DALAM LIMFOSIT T CD4+ NAIF DAN MEMORIABSTRAK
Set T CD4+ periferi boleh dibahagikan kepada dua kumpulan berfungsi berdasarkan ekspresi isofom di permukaan motekut yang mengandungi dua
domain
fosfat intrasellular dikenali sebagai CD45. Sel T memori mengekspres isoform yang mempunyai berat molekulterendah
iaitu CD45RO manakalaset
Tna·Jl mengekspres
isofom CD45RA (manusia) atauCD45RB
(tikus). CD45 iatah protein tirosina fosfatase yang memainkan peranan penting sebagai pengantara isyarat TCR dengan mengaktifkan lck melalui defosforilasi pengawalaturTyros.
Sel T CD4+ naif dan memori manusiaberbeza
dari segi keperluan untuk pengaktifan dan magnitud tindakbalas sel. Sejenis reseptor nukleus, reseptor teraktif pemptoriferasi peroksisom y (PPARy), dilaporkan terlibat di dalam pengawalaturan aktiviti sel imun seperti makrofaj atau monosit dan limfositT.
Memandangkan peranannya di dalam pengawalaturan imun~ kajian terkini
dijalankan
untuk menentukan tahap pengekspresan PPARy di dalam set T CD4+ naif dan memori kerana tahap ekspresiPPARy
berkemungkinan berbeza di dalam isofom CD45 yang berlainan. Tambahanlagi,
perbezaan oorak pengisyaratan dan rembesan sitokin bagi se1 T subset tersebut mungkin disebabkan oleh gabungan dengan isofom PPARy- kemungkinan yang masih be1um dieksplorasi setakat ini. Bagi mengenalpasti peranan PPARr di dalam pengawalaturan pengaktifan sel T CD4+ nalf dan memori, ciglitazoneyang merupakan agonis bagi PPARy
digunakanuntuk memodulasi status pengaktifan se1 T CD4+
nail danmemori
selain pengekspresanPPARy
~ndiri dan sitokin terpilih. Denga~menggunakan Real-Time PCR,
sel
T CD4+ nm1 dan m~.talc
teraktif tidakmengekspres
PPARy1
danPPARy2
manakala sel T CD4+ naif dan memori teraktif mengekspres reseptor tersebut pada paras yang tinggi dengan pengekspresan PPARy2 lebih tinggi berbanding PPARr1 di dalam kedua-dua jenis sel (p<0.01). Tambahan lagi, ekspresi PPARy1 lebih tinggi didalam se1
memoriter.aktif
berbandingsel
T CD4+naif teraktif
{p<O .05}manakala tiada perbezaan
bagipengekspresan .PPARr2 di dalam kedua-
dua sel yang teraktif. Penambahan agonis bagi PPARy iaitu cigtitazone meningkatkan pengekspresan PPARy1 kira-kira 61 kali dan 175kaJi
masing-masing di dalam seJ T CD4+naif dan memori yang teraktif (p<0 .. 01). 8erbeza dengan PPARy1, penambahan
ciglitazone mengurangkan ekspresi PPARy2 kira-kira 650 kali dan 140 kali di dalam sel T
CD4+naif
dan memori teraktif {p<0.01 ) .. Tambahan lagi,tahap ekspresi
gen TGF-Ji dan IL- 1f3
adalah tinggi di dalam sel T C04+naif
danmemori
yang tak teraktiftetapi
berkurangan di dalam keadaan teraktif (p<0.01). Gen IL-8 mengeksprespacta
tahap yang rendah di dalamset
T CD4+ naif dan memori yang tak teraktif tetapi meningkat di dalam keadaansel
tersebut yang teraktif (p<0.01). Wafaubagaimanapun tiada perbezaan bagi ekspresisitokin
tersebut di antara sel T CD4+ naif dan memori di dalam kedua-dua keadaan. IL-2, IFN-y, IL-5, ll-13,
TNF-a.,
GM-CSF dan IL-6 hanya mengekspresdi
dalarnset
T CD4+ naif dan memori yang teraktif tetapi tidak dalam keadaan yang tak tetaktif. Tahap pengekspresanIL-2 dan IL-13 adalah tinggi di dalam sef naif yang teraktif berbanding
se1T CD4+
memori teraktif (p<0.01 ). Berbeza dengan IL-2 dan IL-13. tahap pengekspJesan IFN-ty adatah tinggi di dalam selmemori
teraktif berbanding sel nail yangteraktif
(p<0.05).Walaubagaimanapun, tiada perbezaan di dalam pengekspresan
ll-5,
IL-6, TNF-a dan GM-CSF di antara kedua-dua jenis selyang teraktif.
Penambahan ciglitazonemengurangkan tahap pengekspresan TGF-fl, IL-1[i,IL-8, IL-2. IFN-y, IL-5, TNF-a. dan GM-
CSF di dalam sel T CD4+
nail
dan memori yang teraktif. Peningkatan PPARy1 dan perencatan ekspresi PPARy2 di dalam sel T CD4+ nail dan memori di dalam kehadiranciglitazone mencadangkan bahawa isoform PPARy mungkin mempunyai fungsi yang berbeza dalam pengawalaturan
sel
T. Pengekspresan gen sitokin yang terpilih di dalam sel T CD4+ naif dan memori yang teraktif adaJah konsisten dengan kajian terdahulu.Mekanisma sebenar bagaimana
PPARr
merencat pengekspresan sitokin di dafam sel T CD4+na"1T
dan memori teraktif atau isoform PPARy yang mana bertanggung jawab terhadap kesan ini masih belum dapat di pastikan. PPARy berkemungkinan merencat pengekspresan gen sitokin di dalam sel subset yang teraktif melalui interaksi dengan NF- KB. AP-1 dan STATs yang merupakan faktor transkripsi yang penting bagi sitokin tersebut sebagaimana kajian terdahulu di dalamset
yang lain ..xvil
THE EXPRESSION OF PEROXISOME PROLIFERA TOR-ACTIVATED RECEPTOR
y(PPARy1 AND PPARy2) IN NAi.VE AND MEMORY CD4+ T LYMPHOCYTES
ABSTRACT
Peripheral CD4+ T cells can be divided into two functional groups based on the expression of distinct isoforms of the surface molecule that contains an intracellular two- domain phosphatase portion, known as CD45. Memory T cells express the lowest molecular weight CD45RO isofonn. whereas
naive
T cells express CD45RA (human) or CD45RB (mouse) isoforms. CD45 is a protein tyrosine phosphatase which plays an important role in TCR-mediated signaling through its activation of Lck by de- phosphorylating the regulatoryTyros.
Humannaive
and memory CD4+ T cells differ in the.requirements for activation and magnitude
ofthe cellular responses. The nuclear receptor,
peroxisome proliferator-activated receptor 1 {PPARy) has been reported to be involved inregufatinQ
the activitiesof
immune cells such as macrophages or monocytes and T lymphocytes. Given their roles in immune regulation, the current study was carried out to determine the expressionof
PPARy in humannaive
andmemory
CD4+ T cells since it is possible thatPPARy
may be differentiallyexpressed
in thedifferent
isoforms of CD45. In addition. the differential signaling patterns and cytokine secretionof
these subsets of T cells may require engagement with PPARy isoforms ... a possibility that has not been explored thus far. To further dissectthe
rote of PPARy in the regulation of naive. andmemory
CD4+ T cellactivation,
the PP AR.yagonist, ciglitazone, was used to modulate the
activation status
ofnaive and memory CD4+ T cells as wetl as the expression
ofPPARy
itself and selected cytokines. Using Real .. TimePCR.
unstimulatednaive
and memory CD4+ T cells were found not to express PPARy1 andPPARy2,
whereas stimulated naiveand memory CD4+ T cells express high levels of these receptors with PPARy2 expression being higher than PPARy1 in both cell types (p<0.01). In addition, the PPARy1 expression was higher in stimulated memory as compared to stimulated
naive
C04+ T cells {p<0.05) whereas there was no significant difference between PPARy2 expression in both types of stimulated cells. The addition- of the PPARy agonist, ciglitazone signifiCantly increased the expression of PPARy1 by about 61-fold and 175-foldin
stimulated naive and memory CD4+ T cells respectively (p<0.01). In contrast to PPARy1, the addition of ciglitazone significantly decreased the expression of PPARy2 by about 650-fokl and 140-fold in stimulated na"ive and memory CD4+ Tcells
respectively {p<0.01). In addition, the expression levels of TGF-)3 and· IL-1 J3 gene were higher in unstimulated naive and memory CD4+ T cells but decreased in their stimulated state (p<0.01). lL-8 gene was expressed at low levels in unstimulated but elevated in stimulated naive and memory CD4+ T cells (p<0.01}. However, there were no significant differences in the levels of these cytokines between naive andmemory
CD4+ T celts between both states. IL-4 lFNy, IL-5, IL-13, TNFa, GM-CSF and IL-6 were only expressed in stimulated naive and memory CD4+ T ceUs but not. in their unstimulated state. The expression levels of IL-2 and IL-13 were significantly higher in stimulatednaive
as compared to stimulated memory C04+ T cells (p<0 .. 01 ). In contrast, the expression levelsof
IFNy were significantly higher in stimulated memory as comparedto
stimulated naive CD4+ T cells (p<0.05). However, there were no significant differences in the expression of IL-5, IL-6, TNFa and GM..CSF between both stimulated cell types. The additionof
ciglitazone. decreased the expression levels of TGF-p,
IL-1p, IL-8, IL-2, IFNy, IL-5, TNFa. and GM-CSF in stimulated memory and na"ive CD4+T cell& The induction of PPARr1, and suppression of PPARy2 expression in naTve and
memory CD4+ T cells in the p~sence of ciglitazone suggestthat
the PPARy isoforms may have different functions in T cell regulation. The expreqi~n of $elected cytokine genesin
I : ' • '
xix
activated naive and memory CD4+ T cells is consistent
with
previous studies. The exact mechanism of how PPARy inhibit cytokine expression in stimulatednaive
and memory CD4+ T cells or which PPARy isoforms is responsible for this effect remain uncertain. It is possible that PPARy inhibit the expression of cytokine genes in these stimulated cell subsets. via interacting with NF-KB, AP-1 and STATs. which is important transcription factors for these cytokines as shown by previous studies in other cells.1.1 T cell development 1.1.1 Generation ofT cells
CHAPTER ONE
INTRODUCTION
T cell development occurs in the thymus (Surh and Sprent, 2005). The thymus is a multi- lobed organ consisting of cortical and medullary areas surrounded by a capsule (Figure 1.1). T cell precursors enter the subcapsular cortical areas, where they encounter networks
of
cortical epithelial cells (the thymic stroma) and undergo a period of proliferation. After differentiation. they migrate fromthe
cortex towardsthe
meduUa ofthe
thymus.In the thymic cortex, progenitor
cells
derived fromthe
bone marrow differentiate into T cell lineage by rearranging the TCRJ3 chain and expression of thepre-
TCR complex which lead to multiple changes including, massive expansion of 'double negative• (ON)cD4- a-
precursors
by
IL-7, upregulation of CD4 and CDS on the 'double-positive' (DP)c04• a•
thymocytes, and rearrangement
of
TCRa chain for expression of the TCR (Michieet
al.,2002; von Boehmer, 2004) (Figure 1.1).
DP thymocytes undergo positive selection
to
remove cells that have significant TCR reactivity for self~HC/peptide complexes. After positive selection, DP cells migrate from the cortex to the medulla and differentiate into single-positive CD4 +a-
and CD4-a+
cells.During this differentiation process, negative selection takes over to destroy autoreactive T
cellswith
highavidity
for self components (Sprentet
at .. , 1995;Starr
~tat., 2003) .. Afterpositive and negative selection,
dependingon the affinity and the conwxt
ofsuch binding,
1
Progenitor cells derived from bone marrow
L ~ ~
y&+, C03+, C04-, COB-
Positive selection
ap+, C03+, C04+, COB+, TCR+
(Ooublel positive)
• >95%
Apoptosis
Thymus
Figure 1.1 Pathways ofT cell development (modified from Mehr eta/., 1995)
95% of developing DP cells die via apoptosis while
only
a smallfraction (
<5%) of DP ceUs,move in1o the periphery to form the T cell pool (Surh and Sprent.
2005).In
addition to T ceUs expressing o:J3 TCR, which constitute the majority
ofT cells in
adultst thereis a lineage ofT cells expressing the yo
TCR. Thesecells are
abundantin various
epithelial tissues, such as the epidermis {in mice but not humans), intestinal epithelium, uterus and tongue .. The y5 T ceUs recognize both exogenous antigens such as viral and protozoal peptides. and autoantigen such as heat shock proteins_ Moreover, the peptides can be presented by either class I or class II MHC molecules, and there are several studies which suggest the y8 T cells do not require antigen to
be
presented by MHC moleculesat
all (Adams et al., 2005).1.2 T cell recognition
Approximately 90-95% of peripheral blood T cells are
a.J3
T cells.aJJ
T cells are mainly divided into CD4+ helper T cells and COS+ cytotoxic T cells. CD4+ T cells recognize their specificantigens
in associationwith
the majorhistocompatibility complex
(MHC) dass II molecules, whereas COS+ T cells recognizes antigen in association with MHC class Imolecules.
1.2.1 Antigen presenting cells
Antigens must be processed by antigen presenting cells (APCs) before presentation toT lymphocytes. The APCs which are essential forT cell activation includes dendritic cells (DCs}, mature B cells and macrophages (Sille eta/., 2005).
Des
are found in lymphoidtissues, connective tissues and epithelial cells (Bell et
al.,1999). OCs capture antigens in
peripheral tissues and then move to lymph nodes, where they express high levelsof
3
adhesion and ·co-stimulatory molecules, as well as MHC class II antigens (Bell
et
a7.,1999)~ DCs stop synthesis of these molecules when they migrate but express high levels of MHC class II molecules containing peptides from antigens produced
by
tissues where the DCs originated (Bell eta/., 1.999).8 ceUs can bind to a specific antigen,
internalize itand then degrade
itinto
peptideswhiCh
associate with MHC class II . molecules~ B cells which have high affinity antigen receptors {lgM or lg.O)are
the most potent APC at low concentrations of antigens because otherAPCs cannot capture enough antigens (MeUman et al., 1998). B celis
donOt eXpress eo-
stimulatory molecules such
as
87 but · canbe
induced · to produce87
by bacteria1 constituents.Macrophages ingest microbes and particulate antigens by ·phagocytosis for -processing
and presentationby
MHC class II molecules (Kalish, 1995). High levelsof MHC and co-
stimulatory molecules such as 87 are induced by the uptake of bacteria which is enhanced by receptors specific to certain surface components of bacteria (Mellman et
at.,
1998).These APCs are illustrated in Figure 1.2..
1.2.2
Antigen presentation by majorhistocompatability complex molecules
The MHC is involved in presentation of antigens to T cells. The human MHC class I molecules includes the HLA-A, B and C whereas the human MHC class II molecules comprise
of
the DR, OP and DQ(van
den Elsenet at.,
2004). Thegenetic
locus of MHC class1
and II is presented in Figure 1.3. MHC class I and II molecules are members of theimmunoglobulin supergene family which consist of multiple "immunoglobulin domains" that
Dendritic cells
http://www.dukecancervaccines.org/images/
dend.jpg
B cells
http://www.4-antibody .comlimages/cells.jpg
Macrophage
http :1/www. healingdaily. com/detoxification- diet/macrophages.jpg
Figure 1.2 Antigen presenting cells (APCs)
5
Class Ill
DP
DQDR~ B C
A• D []:[] I I I I I []:[] 0=
HLA dass II
HLA
classI
HLA-DR} HLA-A}
HLA-DQ Human
HLA-B Human
HLA-DP HLA-C
I-A
} Mouse
H·2K}
1-E
H-20 Mouse
H-2L Figure 1.3 The genetic organization of MHC class I and II molecules
have similar structure and amino acid homology to the constant and variable domains of immunoglobulins (Kalish, 1995}.
i)
MHC class I molecules
MHC class l molecule consists of a heavy chain with three immunoglobuUn domains, in noncovalent association
with
Pz-microglobutin (van den E1sen eta/.,
2004) and are expressed on all nucleatedceus
(Kalish, 1995) (Figure 1.4) .. The first two domains of the alpha chain,a1
and a2 form a "groovelf that binds a peptide and togetherwith J3:r
microglobufin, the three member complex allows for its stable expression on the cell surface {Anderson eta/., 1993). MHC class I molecules bind peptides consisting of 8 to 10 amino acids (Falk et a/., 1993). The peptide-binding groove contains pockets with amino acid residues which formed specific interactions with the amino and carboxylic acid terminals of the peptide (Wilson and Fremont, 1993) ..
il) MHC
classII molecules
MHC class II molecules are comPQSed of two a. chains and two f} chains (Kalish, 1995)
(Figure 1.4). The peptide-binding groove
ofMHC class II molecules is open at the ends
and enables binding of longer peptides compared to the MHC class I molecules {Rudenskyet
a/., 1991 ). In the absence of stimulation, MHC dass II molecules are only expressed on professional APCs such as macrophages, mature B ceiJs, Langerhans cells and dendritic cells (Kalish,1995).
The expressionof
MHC class II molecules can beinduced
byinterferon gamma on kerattnocytes and
endothelialcells (Kalish, 1995).
1.2.3 Antigen processing
Antigen processing involves antigen degradation into peptide fragments which
are
recognized by T
cells
via the TCR. A minority of peptide·fragments
from protein antigens is 7HLA-Aw68 (class I)
HLA·DR1 l~ U)
Figure 1.4 MHC molecules (adapted from Roitt eta/., 2001)
able to bind to particular MHC molecules. Furthermore, different MHC molecules engage with different sets of peptides.
i) Endogenous antigens
Protein antigens arising from inside the cell (endogenous antigens) are processed by
the
endogenous pathway for presentation to T cells. Examples of endogenous antigens are viral antigens, transplantation antigens and tumor-associated antigens (Kalish, 1995).
Endogenous antigens derived from cytoplasmic proteins (Moore
et
a/., 1988) are targetedby
conjugationwith
ubiquitin (Michaleket
a/.,1993;
Ciechanover and Schwartz.1994)
facilitating them to be degraded into peptides by the proteosome complex (Yang
et
aL, 1992). Peptides derived from the degradation of cytoplasmic proteins are transported from the cytoplasm to endoplasmic reticulum (ER) by the transporter-associated antigenprocessing (TAP1 and TAP2) molecules {Spies eta/., 1990; Attaya
et
al., 1992; Colonnaet
al.,
1992;
Spies eta/., 1992; Suh eta/.,1994).
Within the ER, a series of chaperone proteins, induding calnexin, calreticulin, ERp57, and immunoglobulin binding protein (Bip) facilitates the proper folding of MHC class 1 and its association with J32 microglobulin. The partially folded MHC class I molecules then interact
with
TAP via tapasin. Newly synthesized MHC class I molecules cornplexed with peptides are then transported from the ER through the Golgi complex to the cell surface for recognition by CDS+ T cells (Coxeta/.,
1990) (Figure 1.5).li) Exogenous antigen
Protein antigens from outside the ceH (exogenous antigens) are processed
by the
exogenous pathway for presentation toT
cells. Examples of exo~nous antigens are extracellular bacteria, bacterial toxins, vaccines and allergens which include pollen and9
Exogenous
antigen Endocyrtc Class I MliC
I
compartments- - - t - - - , . r - - . .
End,>gcnc>cts pathway
(cbs~ J :\U!C)
Exogenous p;Hh wa) (cbs!'\ II ~·1!HC'J
Figure 1.5 Antigens processing pathways (cited from http://www.anzies.com.au)
dust mites (Kalish, 1995). Exogenous antigens are internalized in endosomes by phagocytosis or pinocytosis. The endosomal vacuoles fused with lysosome to form lysosome/endosome compartment. This compartment has an acidic pH and contains multiple degradative enzymes such as acid proteases and cathepsins (Rodriguez and Diment, 1992) to degrade the exogenous antigen into peptides. MHC class II molecules are transported into this lysosome/endosome compartment to bind to the processed peptides (Neefhes and Ploegh, 1992).
MHC class II molecules are
firstlysynthesized in the ER (Kafish, 1995). The invariant chain facilitates MHC class II export from ERin a vesicle (Teyton
eta/.,1990). This vesicle
will fuse with endosome containing degraded proteins and then broken down to leave only a small fragment called CLIP which responsible to inhibit the binding of peptides to the MHC class II molecules before arrival in the endosome/lysosomal compartment {Bodmeret
a/., 1994). Peptides generated in the lysosome/endosome compartment are presented by MHCclass
IImolecules on the cell surface for recognition by
C04+ Tcells (Fabbri
et a/., 2003; van den Elsenet at.,
2004) (Figure 1.5).1.2A
Antigen presentationto T lymphocytes
Antigen presentation is the process by
which
T cells recognize antigen on the surface of an APC (Kalish, 1995). The peptide-MHC (pMHC) complex is recognized by af3 T cells through their TCR (Garcia and Adams, 2005). The TCR is a genetically recombined receptor and analogous to an immunoglobulin molecule (Garcia and Adams, 2005). It is aheterodimer consisting
ofa and p chain held together
bydisulfide bonds,
.eachwith one variable and one constant domain. However, 5% Of the T cells, especially those found in the skin and mucous layers, have TCR consisting of the
1and o chain. Va. and vp are the
hypervariabte regions of TCR, that form three complementary detetmining regions (CDRs}
11
on each chain. CDR1 and CDR2 usually bind to MHC while CDR3 usually binds to the peptide (Garcia and Adams, 2005). TCR has a very short cytoplasmic tails, Which is not appropriate in signal transduction. So it is expressed on the membrane together with the signal transduction complex, CD3. as TCR complex (Figure
1.6).
CD3 is composed of four invariant polypeptides called y, e.o
and t;. The CD3 chains are organized as heterodimers of eitherrs
or 8e and a homodimer of ~~- They, o
and s chains have negatively charged transmembrane region which forms salt bridges with positively charged transmembrane regions ofTCR.
The l; chain comprises a small extracellular domain of only nine amino acids which includes the disulphide bond, a transmembrane segment including a negatively charged residue and a large cytoplasmic tail. All CD3 chains contain one immunoreceptor tyrosine activation motif (IT AM), while three copies of ITAMs are present on each of the l; chain•s cytoplasmic tail (Chan eta/., 1994). FoDowing antigen binding, the ITAMs will associate with tyrosine kinase to initiate intracellular signaling cascade. CD4 and COS are co-receptor molecules that bindto
the non-polymorphic regionsof
MHC molecules and enhance the binding avidity of T cells to the APC. CD4 is a monomeric protein with four domains where two distal domains that bind to the f32 domain of MHC class II. COB is ana
andp
chain heterodimer, each with one domain and a long extended region. COB binds to the a3 domain of MHCdass I.
Both CD4 and C08 have Lck associate with its cytoplasmic tail to initiate signal transduction (Figure 1.6). The Lck or p561ck is a lymphocyte-specific tyrosine kinase of 56 kDa that is attachedto
the intracellularportions of CD4 or CDS.
CDS
CD4
~C03~
Figure 1.6 TCR complex (cited from http://www.immuno.path.cam.ac.uk)
13
1.2.5 Second signal-co-stimulator molecules
Co-stimulatory molecules do not bind to antigen directly but act when TCR binds to antigen. The main functions of co-stimulatory and other accessory molecules are to transduce signal for the complete activation of T cell, ads as adhesion molecules to stabilize the interaction between T cells and APCs and facilitate the migration of T cells. T
cells
that do not receive co-stimulation become anergic (not functioning) and this is important to ensure that self-antigen will not activate self-specific T cells that escaped negative selection (Tan eta/., 1993). There are perhaps many co-stimulator molecules that are involved in the T cell activation process. Some of the important ones are briefly describedbelow.
i) B7-CD28
87 molecules are expressed mainly by professional APCs such as dendritic
cells,
macrophages and mature B lymphocytes. 87-1 and 87-2 are structurally similar, single chain glycoprotein,each
withextracellular lg-like domain, a transmembrane segment and
cytoplasmic tail. Co-stimulation ofT cells mainly comes from the binding of 87-1 (COSO) and 87-2 (CD86)on
APC to the CD28 molecule on T cell membrane {Turkaet at.,
1990) (Figure 1 .. 7). The binding between these molecules brings upon the expression of anti ..apoptosis proteins such as Bcl-x, production of cytokines such as IL-2 and proliferation and differentiation ofT cells.
II) Cytotoxic T lymphocyte associated antigen 4 (CTLA-4) (CD152)
Activated T cells express CTLA-4 instead of CD28 .. CTLA-4 is also a receptor for
87
molecules. Its binding to 87 inhibits T cell function
byinterrupting signals transduced
byCD28. Mutant T cell that lack CTLA-4
cannot be deactivated, resulting in the increaseincidence of autoimmune reactions.
C02
LFA-3 (CD58)
LFA-1
ICAM-1
Tcell
APC TCR
MHC II
CD28
87-1/87-2 (CD80/CD86)
Figure 1.7 Critical molecules involved in antigen presentation (adapted from Roitt eta/.
2001)
15
iii) Other accessory molecules
CD2 act as an adhesion molecule by binding to LFA-3 (CD58) molecules found on a wide range of cells (Damle
et at.,
1992; Perlmutter, 1993) {Figure 1.7). lt is involved in the interaction between T cells and APCs. CD11 b/CD18 is also an adhesion molecule Hke CD2. It binds to the intracellular adhesion molecule-1 (ICAM-1) on APCs or target cells (Damle et a/., 1992~ Perlmutter, 1993) (Figure· 1 .. 7). Activated CD4 cells express.CD401igands (CD40L) that binds
to
the CD40 molecules on. B cells and macrophages .. The-binding induces the activation of B cell and macrophages accompanied
bythe induction of
87 molecule expression on APC and enhancement of proliferation and differentiation of Tcells.
1.2.6 T cell activation
T cell activation is initiated
by
the interaction of the TCR with peptide-MHC complexes.TCR engagement triggers the tyrosine phosphorylation
of
the IT AM present on the TCR- associated CD3-l; subunit by the protein tyrosine kinase (PTK) Lck (Chan et al., 1994;Myung et a/., 2000). All ITAMs contain two sequence elements (Tyr-X-X-Leu) with potential tyrosine phosphorylation sites which is separated by seven or eight variable
amino acids (Hegedus et at., 1999) (Figure 1.8). When two tyrosines in a single
motif are phosphorylated, IT AM forms a binding site for a cytoplasmic PTK, known as ZAP-70. This recruitment initiatesZAP-70
activation and downstream signaling cascade such as the activation of phospholipase ~1 and protein kinase C (PKC).Engagement of TCR induces activation of phospholipase Cy1 (PLCy1),
which
catalyzesthe hydrolysis of inositol phospholipids (PIP2) to produce inositol 1, 4, 5-triphosphate (IP3)
and diacylglycerol (DAG)which
activate two distinct signalingpathways
in T cells (vanLeeuwen and Samelson, 1999}. IP3 migrate from the cytosol to the endoplasmic reticulum,
r-X-X-Leu-X-X-X-X-X-X-X-Leu-X-X-Tyr
Figure 1.8 The IT AM complex
The ITAMs contain two sequence elements (Tyr-X-X-Leu) separated by 7 or 8 variable amino acids. When the tyrosine residues are phosphorylated, IT AM acts as a docking site for the tyrosine kinase, ZAP-70.
17
where it binds' to its receptor and initiates the release of internal Ca2+ stores which then cause a rapid increase in the cytosolic free Ca2+ ion concentration (Lewis, 2001). Cytosolic free Ca2+ acts as a signaling molecule by binding to calmodulin (Ca2 .... dependent regulatory protein) (Quintana et al.,
2005).
This calcium-calmodulin complex activate severalenzymes especially calcineurint
aCa
2+-calmodulin dependent
protein phosphatase which subsequently dephosphorylates the nuclear factor of activated T cells (NFAT) (Rao et al., 1997). This transcription factor is an inducible regulatory complex critical for transcriptional induction of IL-2 in activated T cells, but also regulate the transcription of various genes such as cytokines, cell surface receptors and regulatory enzymes (Rao et al., 1997;Martinez-martinez
et
a/.t 2004). The increase in free cytosotic C<f+' results in the translocation of inactive cytosolic PKC to the cell membrane.. DAG activates PKC by inducing a conformational change that becomes the catalytic site of the kinase accessible to ~ubstrate (Lewis, 2001 ). Although DAG activates multiple isofonns of PKC, only PKCa isrequired forT cell activation in vivo (Sun et al., 2000; Pfeifhofer eta/., 2003). The GTP
bound Ras (GTP·Ras) functions as adivator of a cascade of enzymes namely mitogen·
activated protein (MAP) kinases. The MAP kinase cascade consist of three different kinases, the extracellular signal-regulated kinases (ERKs) (Schaeffer and Weber, 1999), p38
Map-kinases (Han
andUeitch,
1999)and
c-Jun NH2-tenninal kinases (JNKs) (Davis, 2000). The activated ERK phosphorylates Elk1, which then stimulates transcription of Fos, the first component of the activation protein-1 (AP-1) (Genot eta/., 1996). Parallel to this pathway, the adapter protein also activates a GTP exchange protein namely Vav thatacts
on Rae. This Rac-GTP initiates the activation of the c-Junby
JNKat
Ser-63 and Ser-73 within the transactivation domain (Whitmarsh and Davis; 1996). c-Jun heterodimerlzeswith c-Fos to form AP-1, the regulatory element in the IL-2 promoter
thatis important for
early transcriptionof
the IL-2 gene (Durand etal.,
1988). The brief overall intracellular signaling involved in T cell activation as described herein is summarized inFigure
1.9.CD45 CD4
phosphatase
domains PLC-y
•
PIP~~-
IP
f:1? ~ DAG
C{J' +
Ca2•
+ ®
+ + + +
+ + +
Figure 1.91ntracellular signaling in T cell activation (adapted from Roitt eta/., 2001)
19
1.3 The protein tyrosine phosphatase, CD45
The protein tyrosine phosphatase (PTPase) CD45 is a transmembrane glycoprotein expressed on the surface of all nucleated haematopoietic cells except mature erythrocytes and platelets (Trowbridge and Thomas, 1994). CD45 consists
of
its splice variants namely CD45RA, CD45RB, CD45RC and CD45RO. CD45 comprises up to 10% of the T and 8 cell surface molecules (Sasaki et al., 2001 ). This high level of expression coupled with the differential expression of selected variants on naive and memory T cells and their role in immune regulation makes the CD45 molecules are important molecule to be investigated.1.3.1 Structure of CD45
CD45 is expressed in muHiple isoforms as a result of alternative RNA splicing of exon 4 to
s
(Trowbridge and Thomas, 1994; Alexanderet
at~, 1997) with a molecular weight range'
from 180-240 kDa. The high molecular weight isoforms contain exon 4/A, 518 and 6/C (CD45ABC) and the low molecular weight is the CD45RO isoform (Figure 1.10). The genetic organization
of
CD45 is shown in Figure 1.11. The CD45 ectodomain is characterized by the three alternatively sp1iced exons A, 8 and C that are rich in serine, threonine and proline residues, a cysteine rich domain followedby
fibronectin (FN)type Ill
repeats at the N-tenninus (McNeill eta/., 2004). The ectodomain is heavily glycosylated,mainly
N-linkedin the FN-111 and cysteine
richregions and O..Jinked in the A, B and C exon
encoded regions (McNeill et al .• 2004). The CD45RO lacks the A, 8 and C exon encoded region (McNeill
et
a/., 2004). The intracytoplasmic tail of CD45 is highly conserved between all mammalian species and contains the so-called 01-domain which has PTPase activity, whereas the 02-domain has no signifiCant PTPase activity due to changes in criticalamino acids required for catalytic
activity (Sasakieta/.,
2001).Figure 1.10 The CD45 structure (adapted from McNeHI eta/., 2004)
21
CD45Exons
4
I 5 I 6
3
45
6 7CD45RABC
CD45RAB
CD45RAC
CD45BC
CD45RA
CD45RB
CD45RC
CD45RO
Figure 1.11 Genomic organization of CD45ABC (adapted from Fukuhara
et
al.., 2002)1.3.2 Biological functions
CD45 is an important positive regulator of TCR and BCR mediated signaling required for the activation and development of lymphocytes (Kishihara et al., 1993; Byth et al., 1996).
CD45 PTPase activity is required for histamine degranulation following lgE receptor cross- linking in mast cells (Berger et al., 1994). CD45 expression is also invOlved in antigen receptor-driven thymocyte maturation and B cel1 selection (Kishihara eta/., 1993; Byth et
at.,
1996). Mutation in the protein tyrosine phosphatase receptor type C (PTPRC} gene encoding CD45 and abnormalities in the expression of CD45 splice variants increased the incidence of severe combined immunodeficiency disease (SCID) in humans (Kung et al.,2000).
1.3.3 CD45 regulates protein tyrosine kinase, Lck
An important early step in TCR signaling is the phosphorylation of ITAMs by the Src-like protein tyrosine kinase Lck (lrles
et
a/., 2002) .. This kinase is located in glyosphingoUpid- enriched membrane {GEMs) and its activity is regulated by the opposing actions of the CD45 PTPase and the carboxyl-terminal Src kinase (Csk) (Bergmanet
al., 1992; Thomas and Brown, 1999). Phosphorylation ofTy,SOS
in Lckby
Csk leadsto
an Src homology domain 2 (SH2)-mediated intramolecular interactionwhich
inhibits activation of Lck by trans-autophosphorylation of Ty~ in its catalytic domain (Sicheri and Kuriyan, 1997).CD45 dephosphocytates the
Ty,SOS
to relievethis
inhibition (Yamaguchi and Hendrickson.1996; Sicheri and Kuriyanr 1997) allowing the Lck to promote full phophorylation
of
the IT AM motifs of the CD3/' components and faalitate the recruitment and activation of the ZAP-70 tyrosine kinase (Leitenberget at .•
1999). In addition,C045 may
maintain Lck in an"open" configuration
which
enhancesLck.
interaction and recruitment of various adapter proteins and other signaling molecules into large macromolecular complex that facilitates T23
cell activation and IL-2 secretion independently of Lck kinase activity (Collin and Burakoff, 1993; Sieh eta/., 1993; Xu and
Littman,
1993).1.3.4 CD45 inactivate Jak
family
kinaseThe Janus .. kinase/signal transducers and activators of transcription (Jak/STA
T) pathway
are involved in the signaling of many cytokines (Scott eta/., 2002). Following stimulation of cytokine receptors, Jaks (Jak1, Jak2, Jak3 and Tyk2) are phosphorylated on their tyrosine residues and are activated to phosphorylate STATs. STATs phosphorylation by Jaks
results in dissociation and homo- or hetero.dimerization and ultimately translocation to the nucleus where they can rapidly and specifically activate target genes (lvaskhiv, 1995).
CD45 dephosphorylates all Jaks and inhibit the secretion of cytokines (Sasaki et al., 2001). CD45 also negatively regulates JL .. 13 mediated cellular
proliferation.
erythropoetin- dependent hematopoiesis and antiviral responses in vitro and in vivo (Sasaki et at., 2001 ).1.4 Naive CD4+ T cells
Naive CD4+ T cells are thymic emigrants which had already undergone various maturation and selection processes in the thymus and populate the peripheral blood and secondary lymphoid organs such as spleen,
lymph
nodes and the mucosal-associated lymphoid tissue.They
have not been activatedby
specific antigen invivo
{Van Uer and Baars,1999). These cells can
becharacterized by the expression
ofthe high molecular weight isoform
ofCD45, CD45RA, and low levels of 131 and P2 integrins (Sanders et
a/.,1988;
Prince et al., 1992; Masopust
et
al., 2004). Naive CD4+ T cells express CCR7 and theperipheral lymph node homing receptor CD62L
thatfacilitate the migration
ofthese cells to
the T cell areas
ofthe secondary lymphoid organs (SaOusto
et a/., 1999; Masopust et a/.,2004; Sallusto et
al., 2004). NaiveCD4+ T cells require the engagement not
onlyof TCR,
but also thecostimulatory
receptor, CD28 for completeactivation which
leads to